There is thus an urgent need to develop new antibiotics to overcome the challenge

While well characterized in animals, bacterial ferrochelatases were discovered much later and seen to differ from animal homologues. Eukaryotic ferrochelatases, typically possess three regions, an N-terminal organelle targeting region that is proteolytically cleaved, a second core region of 330 residues sharing homology with bacterial ferrochelatases and a C-terminal region that contains the dimerization motif as also three of the four cysteine ligands of the 2Fe-2S cluster . It is suggested that mycobacterial ferrochelatases differ from their eukaryotic counterparts in that they are monomers that are not membrane-associated. Rv1485, was hence selected as an ideal test case for whom annotation through our Gefitinib distributor structural pipeline was determined and compared with existing information. Firstly, 1HRK was selected as a template to model Rv1485 . The generated model could be superposed on the template with less than 0.9 Angstrom RMSD . Further, other quality checks were performed to asses the quality of the model using ProCheck, ProQ and ERRAT . Multiple sequence alignments of Rv1485 and homologues from other mycobacteria, Caulobacter crescentus , S. pombe and human ferrochelatases showed a high conservation of residues in the protein core . The alignments show that like the eukaryotic ferrochelatases, such heme synthases also possess a C-terminal region with some of the Cysteine ligands of the 2Fe-2S clusters. The alignments show that S. pombe ferrochelatase contains cysteines analogous to the four cluster-ligating cysteines that are found in animal ferrochelatases. However, C. crescentus ferrochelatase does not possess cysteines in these same position and mycobacterial ferrochelatases possess four-cysteine ligation residues involving C158, C332, C339, and C341 . Examination of the substrate-free and bound forms of the template enzyme show an open active site pocket that is closed through conformation change in the substrate-bound enzyme. Indeed, studies have shown that the active site pocket is closed around the porphyrin macrocycle with a number of active site residues that have reoriented side chains. An important role for a hydrogen bond network involving H263, H341, and E343 has been suggested in the reorganization of active site side chains. Interestingly, a similar network of residues is also seen in the mycobacterial ferrochelatase. PocketDepth and LigsiteCSC predictions, made on the modeled protein identified two pockets that 154447-36-6 overlap with the template pockets harboring the 2Fe�C 2S cluster and the co-crystallized ligand .

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